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NNI nanoinformatics conference 2023: Movement toward a common infrastructure for federal nanoEHS data computational toxicology: Short communication

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The National Nanotechnology Initiative organized a Nanoinformatics Conference in the 2023 Biden-Harris Administration’s Year of Open Science, which included interested U.S. and EU stakeholders, and preceded the U.S.-EU COR meeting on November 15th, 2023 in Washington, D.C. Progress in the development of a common nanoinformatics infrastructure in the European Union and United States were discussed. Development of contributing, individual database projects, and their strengths and weaknesses, were highlighted. Recommendations and next steps for a U.S. nanoEHS common infrastructure were discussed in light of the pending update of the National Nanotechnology Initiative (NNI)’s Environmental, Health and Safety Research Strategy, and U.S. efforts to curate and house nano Environmental Health and Safety (nanoEHS) data from U.S. federal stakeholder groups. Improved data standards, for reporting and storage have been identified as areas where concerted efforts could most benefit initially. Areas that were not addressed at the conference, but that are critical to progress of the U.S. federal consortium effort are the evaluation of data formats according to use and sustainability measures; modeler and end user, including risk-assessor and regulator perspectives; a need for a community forum or shared data location that is not hosted by any individual U.S. federal agency, and is accessible to the public; as well as emerging needs for integration with new data types such as micro and nano plastics, and interoperability with other data and meta-data, such as adverse outcome pathway information. Future progress will depend on continued interaction of the U.S. and EU CORs, stakeholders and partners in the continued development goals for shared or interoperable infrastructure for nanoEHS.

Impact/Purpose

Recent efforts of the NNI DIIG have focused on the creation of a Federal nanoEHS Consortium with the primary goal of developing FAIR data standards. Federal partners (EPA, NIOSH, OSHA, CPSC, FDA) and academic partnerships that have received Federal funding in the past (Duke-CIENT) have recently exchanged datasets, which do not include proprietary or security limitations. These “test” data consist of relational database structures or tables that are contributed by each partner agency for processing and curation. A focus on data interoperability and sustainability of hosting is a secondary goal of this effort. The EPA has developed the OntoSearcher tool to expedite this process. Through this US Federal Consortium effort, and the coordinated curation and semantic integration of the individual datasets, member agencies hope to improve the data standards and interoperability of individual nanoEHS datasets. Two unresolved issues are 1. a location for data hosting that is both sustainable long term, but not hosted by any one Agency; and 2. Will semantic mapping provide a useful format in the long term that necessitates the effort required and meets the needs of various stakeholders, esp. non-technical users.

Citation

Mortensen, H., J. Amos, T. Exner, K. Flores, S. Harper, Ann Jarabek, F. Klaessig, V. Lobaskin, I. Lynch, C. Marcum, M. Martens, B. Brough, Q. Spadola, AND R. Bjorkland. NNI nanoinformatics conference 2023: Movement toward a common infrastructure for federal nanoEHS data computational toxicology: Short communication. Elsevier B.V., Amsterdam, NETHERLANDS, 30:100316, (2024). [DOI: 10.1016/j.comtox.2024.100316]

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DOI: NNI nanoinformatics conference 2023: Movement toward a common infrastructure for federal nanoEHS data computational toxicology: Short communication
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Last updated on July 02, 2024
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