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Bridging in vitro and in vivo inhalation toxicity: Volatile organic compounds elicit similar transcriptomic points of departure in human airway cells and mouse respiratory tract

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In vitro differential gene expression analysis has been proposed as a higher throughput alternative to traditional animal toxicity testing for chemical risk assessment, but few studies have compared transcriptomic differences between respiratory in vitro systems and in vivo inhalation exposures. We assessed physiological responses and respiratory tract gene changes in adult mice after a single acute nose-only inhalation exposure to acrolein, dichloromethane, trichloroethylene, or 1,3-butadiene, and compared gene expression responses with those of differentiated primary human bronchial epithelial cells (pHBECs) and immortalized BEAS-2B cells exposed to VOCs at the air-liquid interface. Gene expression in response to VOCs was compared using whole transcriptome analyses of mouse nasal septum and lung samples and human in vitro cell lysates. Gene expression patterns of human and mouse tissues were distinct, with relatively little overlap of differentially expressed genes (DEGs) except for Hmox1 which was commonly upregulated across exposures to VOCs. To enable comparisons across in vitro and in vivo exposures, we calculated VOC cellular uptake and applied a high-throughput, generic physiologically based toxicokinetic (PBTK) model to estimate internal lung concentrations. Although transcriptomic responses varied across species and tissues, in vitro and in vivo points of departure (PODs) derived from benchmark dose modeling with predicted internal concentrations were largely comparable (<2-fold) except for dichloromethane, which exhibits known species-specific differences in metabolic activation. These results highlight the utility of new approach methodologies (NAMs) for evaluating acute inhalation exposures and emphasize the importance of refining internal dose estimates to improve in vitro to in vivo extrapolation (IVIVE).

Impact/Purpose

In this study, we examined in vivo concentration-dependent respiratory tract gene expression changes following acute in vivo volatile organic compound (VOC) exposures in mice and compared the transcriptomic profiles from lung and septal tissues to in vitro transcriptomic responses in BEAS-2B cells and differentiated primary human bronchial epithelial cells (pHBECs) exposed to VOCs at the air-liquid interface (ALI). Remarkable differences in gene expression profiles were apparent not only between mouse tissues and human cells, but between types of tissues or cells within each species. Increasing concentrations of VOCs produced divergent numbers of differentially expressed genes with moderate to minimal overlap of homologous genes among in vitro and in vivo tissues. Despite these significant variations, biological pathway altering concentrations (BPACs) at the gene and pathway levels in BEAS-2B cells were reasonably close to BPACs from in vivo tissues for acrolein, 1,3-butadiene, and dichloromethane exposures. Our study supports the use of transcriptomic NAMs as a sensitive endpoint for both in vitro and in vivo inhalation exposures and highlights that BPACs from in vitro ALI exposures of immortalized airway cells such as BEAS-2B are fairly similar to those derived from lung and septal tissues following acute in vivo exposures. Interestingly, BPACs from differentiated pHBECs exposed to trichloroethylene were much less conservative than those from in vivo tissues. The conserved responses across these diverse exposures and diverse systems identifying pathways related to inflammatory processes and stress responses demonstrate that, despite this limitation, the utility of these NAMs to identify adverse effects can persist.

Citation

Jackson, T., J. Murray, C. Schacht, P. Evansky, M. Monsees, J. Harrill, Ian Gilmour, Andy Johnstone, W. Williams, R. Grindstaff, M. Schladweiler, S. Vance, AND S. Gavett. Bridging in vitro and in vivo inhalation toxicity: Volatile organic compounds elicit similar transcriptomic points of departure in human airway cells and mouse respiratory tract. Elsevier Science Ltd, New York, NY, 387:127342, (2025). [DOI: 10.1016/j.envpol.2025.127342]

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DOI: Bridging in vitro and in vivo inhalation toxicity: Volatile organic compounds elicit similar transcriptomic points of departure in human airway cells and mouse respiratory tract
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Last updated on December 12, 2025
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